Add status update for GenomicsDB jobs

bbimber · bbimber · commit cf0e0ec1776a · 2022-03-29T11:35:10.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/util/AbstractGenomicsDBImportHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/util/AbstractGenomicsDBImportHandler.java
@@ -786,6 +786,7 @@ private void doConsolidate(JobContext ctx, File workingDestinationWorkspaceFolde
         {
             File contigFolder = new File(workingDestinationWorkspaceFolder, getFolderNameFromInterval(i));
             ctx.getLogger().info("Consolidating contig folder: " + contigFolder);
+            ctx.getJob().setStatus(PipelineJob.TaskStatus.running, "Consolidating contig folder: " + contigFolder);
 
             List<String> toRun = new ArrayList<>(baseArgs);
             toRun.add("-a");

Original file line number	Diff line number	Diff line change
`@@ -786,6 +786,7 @@ private void doConsolidate(JobContext ctx, File workingDestinationWorkspaceFolde`
`786`	`786`	`{`
`787`	`787`	`File contigFolder = new File(workingDestinationWorkspaceFolder, getFolderNameFromInterval(i));`
`788`	`788`	`ctx.getLogger().info("Consolidating contig folder: " + contigFolder);`
	`789`	`+ ctx.getJob().setStatus(PipelineJob.TaskStatus.running, "Consolidating contig folder: " + contigFolder);`
`789`	`790`
`790`	`791`	`List<String> toRun = new ArrayList<>(baseArgs);`
`791`	`792`	`toRun.add("-a");`