Set HOME environment variable specifically for SingleR

bbimber · bbimber · commit cb55dde6f7c6 · 2023-11-17T05:57:18.000-08:00
diff --git a/singlecell/resources/chunks/RunSingleR.R b/singlecell/resources/chunks/RunSingleR.R
@@ -1,4 +1,7 @@
-for (datasetId in names(seuratObjects)) {
+# Added to avoid celldex/ExperimentHub/BiocFileCache write errors
+Sys.setenv('HOME', '/dockerHomeDir')
+
+ for (datasetId in names(seuratObjects)) {
     printName(datasetId)
     seuratObj <- readSeuratRDS(seuratObjects[[datasetId]])
 
