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Fix field name
1 parent e0d9370 commit c66642f

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singlecell/src/org/labkey/singlecell/CellHashingServiceImpl.java

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -287,7 +287,7 @@ private void writeCiteSeqBarcodes(PipelineJob job, Map<Integer, Set<String>> gex
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FieldKey.fromString("antibody/markerLabel"),
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FieldKey.fromString("markerLabel"),
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FieldKey.fromString("antibody/adaptersequence"),
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FieldKey.fromString("antibody/pattern")
290+
FieldKey.fromString("antibody/barcodePattern")
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));
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for (int gexReadsetId : gexToPanels.keySet())
@@ -315,7 +315,7 @@ private void writeCiteSeqBarcodes(PipelineJob job, Map<Integer, Set<String>> gex
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String label = StringUtils.trimToNull(results.getString(FieldKey.fromString("markerLabel"))) == null ? results.getString(FieldKey.fromString("antibody/markerLabel")) : results.getString(FieldKey.fromString("markerLabel"));
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String name = StringUtils.trimToNull(results.getString(FieldKey.fromString("markerLabel"))) != null ? results.getString(FieldKey.fromString("markerLabel")) :
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StringUtils.trimToNull(results.getString(FieldKey.fromString("antibody/markerName"))) != null ? results.getString(FieldKey.fromString("antibody/markerName")) : results.getString(FieldKey.fromString("antibody"));
318-
metaWriter.writeNext(new String[]{results.getString(FieldKey.fromString("antibody")), results.getString(FieldKey.fromString("antibody/adaptersequence")), name, label, results.getString(FieldKey.fromString("antibody/pattern"))});
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metaWriter.writeNext(new String[]{results.getString(FieldKey.fromString("antibody")), results.getString(FieldKey.fromString("antibody/adaptersequence")), name, label, results.getString(FieldKey.fromString("antibody/barcodePattern"))});
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});
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job.getLogger().info("Total CITE-seq barcodes written: " + barcodeCount.get());

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