Additional metrics logging

bbimber · bbimber · commit c53ddd239953 · 2020-08-21T17:51:35.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/PicardMetricsUtil.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/PicardMetricsUtil.java
@@ -94,6 +94,10 @@ private static List<Map<String, Object>> processWgsMetricsBase(MetricsFile mf, L
     {
         List<Map<String, Object>> ret = new ArrayList<>();
         List<WgsMetrics> metrics = mf.getMetrics();
+        if (metrics.size() > 1)
+        {
+            log.info("More than one set of WgsMetrics, for category " + category + ": " + metrics.size());
+        }
 
         for (WgsMetrics m : metrics)
         {

Original file line number	Diff line number	Diff line change
`@@ -94,6 +94,10 @@ private static List<Map<String, Object>> processWgsMetricsBase(MetricsFile mf, L`
`94`	`94`	`{`
`95`	`95`	`List<Map<String, Object>> ret = new ArrayList<>();`
`96`	`96`	`List<WgsMetrics> metrics = mf.getMetrics();`
	`97`	`+ if (metrics.size() > 1)`
	`98`	`+ {`
	`99`	`+ log.info("More than one set of WgsMetrics, for category " + category + ": " + metrics.size());`
	`100`	`+ }`
`97`	`101`
`98`	`102`	`for (WgsMetrics m : metrics)`
`99`	`103`	`{`