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Bugfix to Nimble/Append
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singlecell/src/org/labkey/singlecell/pipeline/singlecell/AppendNimble.java

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -62,6 +62,7 @@ protected Chunk createParamChunk(SequenceOutputHandler.JobContext ctx, List<Seur
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ret.bodyLines.add("nimbleGenomes <- list(");
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String genomeStr = getProvider().getParameterByName("nimbleGenomes").extractValue(getPipelineCtx().getJob(), getProvider(), getStepIdx(), String.class);
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JSONArray json = new JSONArray(genomeStr);
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String delim = "";
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for (int i = 0; i < json.length(); i++)
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{
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JSONArray arr = json.getJSONArray(i);
@@ -72,7 +73,8 @@ protected Chunk createParamChunk(SequenceOutputHandler.JobContext ctx, List<Seur
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int genomeId = arr.getInt(0);
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String targetAssay = arr.getString(1);
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ret.bodyLines.add("\t" + genomeId + " = " + targetAssay);
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ret.bodyLines.add("\t" + delim + "'" + genomeId + "' = " + targetAssay);
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delim = ",";
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}
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ret.bodyLines.add(")");
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