Improve cellranger description fields

Author: bbimber

singlecell/src/org/labkey/singlecell/run/CellRangerGexCountStep.java

@@ -165,6 +165,10 @@ protected static String getAlignDescription(PipelineStepProvider<?> provider, Pi
         }
 
         List<String> lines = new ArrayList<>();
+
+        String includeIntrons = provider.getParameterByName("includeIntrons").extractValue(ctx.getJob(), provider, stepIdx, String.class, "false");
+        lines.add("Include Introns: " + includeIntrons);
+
         if (addAligner)
         {
             lines.add("Aligner: " + provider.getName());

singlecell/src/org/labkey/singlecell/run/CellRangerVDJWrapper.java

@@ -513,7 +513,8 @@ private File processOutputsForType(String sampleId, Readset rs, ReferenceGenome
             // NOTE: only tag the vloupe file for a/b:
             else if (isPrimaryDir)
             {
-                output.addSequenceOutput(outputVloupe, rs.getName() + " 10x VLoupe", "10x VLoupe", rs.getRowId(), null, referenceGenome.getGenomeId(), null);
+                String versionString = "Version: " + getWrapper().getVersionString();
+                output.addSequenceOutput(outputVloupe, rs.getName() + " 10x VLoupe", "10x VLoupe", rs.getRowId(), null, referenceGenome.getGenomeId(), versionString);
             }
 
             return csv;