Add additional feature attributes to index

bbimber · bbimber · commit bc63b67d719a · 2020-06-08T08:40:55.000-07:00
diff --git a/jbrowse/src/org/labkey/jbrowse/JBrowseRoot.java b/jbrowse/src/org/labkey/jbrowse/JBrowseRoot.java
@@ -1441,6 +1441,8 @@ private List<JSONObject> processFile(ExpData data, File outDir, String featureNa
             File temp = null;
             Set<String> nameAttrs = new HashSet<>();
             nameAttrs.add("gene_name");
+            nameAttrs.add("ncbi_geneid");
+            nameAttrs.add("ensembl_geneid");
             if ("gtf".equalsIgnoreCase(ext))
             {
                 getLogger().info("converting GTF to GFF");

Original file line number	Diff line number	Diff line change
`@@ -1441,6 +1441,8 @@ private List<JSONObject> processFile(ExpData data, File outDir, String featureNa`
`1441`	`1441`	`File temp = null;`
`1442`	`1442`	`Set<String> nameAttrs = new HashSet<>();`
`1443`	`1443`	`nameAttrs.add("gene_name");`
	`1444`	`+ nameAttrs.add("ncbi_geneid");`
	`1445`	`+ nameAttrs.add("ensembl_geneid");`
`1444`	`1446`	`if ("gtf".equalsIgnoreCase(ext))`
`1445`	`1447`	`{`
`1446`	`1448`	`getLogger().info("converting GTF to GFF");`