Add stub for manage study view

Author: bbimber

Studies/resources/schemas/studies.xml

@@ -126,12 +126,10 @@
     </table>
 
     <table tableName="studies" tableDbType="TABLE" useColumnOrder="true">
+        <javaCustomizer class="org.labkey.ldk.query.DefaultTableCustomizer" />
         <tableTitle>Studies</tableTitle>
+        <tableUrl>/studies/manageStudy.view?studyId=${rowid}</tableUrl>
         <auditLogging>DETAILED</auditLogging>
-        <importUrl></importUrl>
-        <insertUrl></insertUrl>
-        <updateUrl></updateUrl>
-        <deleteUrl></deleteUrl>
         <columns>
             <column columnName="rowid">
                 <isAutoInc>true</isAutoInc>
@@ -192,12 +190,9 @@
     </table>
 
     <table tableName="studyCohorts" tableDbType="TABLE" useColumnOrder="true">
+        <javaCustomizer class="org.labkey.ldk.query.DefaultTableCustomizer" />
         <tableTitle>Study Cohorts</tableTitle>
         <auditLogging>DETAILED</auditLogging>
-        <importUrl></importUrl>
-        <insertUrl></insertUrl>
-        <updateUrl></updateUrl>
-        <deleteUrl></deleteUrl>
         <columns>
             <column columnName="rowid">
                 <isAutoInc>true</isAutoInc>
@@ -274,12 +269,9 @@
 
     <table tableName="anchorEvents" tableDbType="TABLE" useColumnOrder="true">
         <tableTitle>Study Anchor Events</tableTitle>
+        <javaCustomizer class="org.labkey.ldk.query.DefaultTableCustomizer" />
         <description>This table contains the key event types that anchor relative dates in this study</description>
         <auditLogging>DETAILED</auditLogging>
-        <importUrl></importUrl>
-        <insertUrl></insertUrl>
-        <updateUrl></updateUrl>
-        <deleteUrl></deleteUrl>
         <columns>
             <column columnName="rowid">
                 <isAutoInc>true</isAutoInc>
@@ -342,12 +334,9 @@
 
     <table tableName="expectedTimepoints" tableDbType="TABLE" useColumnOrder="true">
         <tableTitle>Study Expected Timepoints</tableTitle>
+        <javaCustomizer class="org.labkey.ldk.query.DefaultTableCustomizer" />
         <description>This table contains the expected timepoints within this study, by cohort</description>
         <auditLogging>DETAILED</auditLogging>
-        <importUrl></importUrl>
-        <insertUrl></insertUrl>
-        <updateUrl></updateUrl>
-        <deleteUrl></deleteUrl>
         <columns>
             <column columnName="rowid">
                 <isAutoInc>true</isAutoInc>
@@ -432,6 +421,7 @@
 
     <table tableName="timepointToDate" tableDbType="TABLE" useColumnOrder="true">
         <tableTitle>Timepoint to Date Range</tableTitle>
+        <javaCustomizer class="org.labkey.ldk.query.DefaultTableCustomizer" />
         <description>Per subject, this table contains the allowable date ranges to map record to timepoint label. It is usually populated automatically, but can be manually overridden</description>
         <auditLogging>DETAILED</auditLogging>
         <importUrl></importUrl>

Studies/resources/views/manageStudy.html

@@ -1 +1,59 @@
+<script type="text/javascript" nonce="<%=scriptNonce%>">
+
+    (function($, LABKEY) {
+        $(function(){
+            $( document ).ready(function() {
+                const studyId = LABKEY.ActionURL.getParameter('studyId')
+                if (!studyId) {
+                    alert('Must supply a study ID!')
+                    return
+                }
+
+                const webpart = <%=webpartContext%>;
+
+                const parentDiv = $('#' + webpart.wrapperDivId)
+                parentDiv.append('<div id="' + webpart.wrapperDivId + '-studyCohorts"></div>')
+                parentDiv.append('<div id="' + webpart.wrapperDivId + '-anchorEvents"></div>')
+                parentDiv.append('<div id="' + webpart.wrapperDivId + '-expectedTimepoints"></div>')
+
+                LDK.Utils.getBasicQWP({
+                    frame: 'portal',
+                    title: 'Cohorts',
+                    name: 'query',
+                    schemaName: 'studies',
+                    queryName: 'studyCohorts',
+                    filterArray: [LABKEY.Filter.create('studyId',studyId, LABKEY.Filter.Types.EQUAL)],
+                    maxRows: 20,
+                    renderTo: webpart.wrapperDivId + '-studyCohorts'
+                }).render();
+
+                LDK.Utils.getBasicQWP({
+                    frame: 'portal',
+                    title: 'Anchor Events',
+                    name: 'query',
+                    schemaName: 'studies',
+                    queryName: 'anchorEvents',
+                    filterArray: [LABKEY.Filter.create('studyId',studyId, LABKEY.Filter.Types.EQUAL)],
+                    maxRows: 20,
+                    renderTo: webpart.wrapperDivId + '-anchorEvents'
+                }).render();
+
+                LDK.Utils.getBasicQWP({
+                    frame: 'portal',
+                    title: 'Expected Timepoints',
+                    name: 'query',
+                    schemaName: 'studies',
+                    queryName: 'expectedTimepoints',
+                    filterArray: [LABKEY.Filter.create('studyId',studyId, LABKEY.Filter.Types.EQUAL)],
+                    maxRows: 20,
+                    renderTo: webpart.wrapperDivId + '-expectedTimepoints'
+                }).render();
+            })
+        });
+    }(jQuery, LABKEY));
+
+</script>
+
+
 PLACEHOLDER: Make a page that accepts a studyId and renders useful UI to manage timepoints, run QC, and show data
+<br><br>

Studies/resources/views/studiesOverview.html

@@ -3,16 +3,28 @@
 (function($, LABKEY) {
     $(function(){
         $( document ).ready(function() {
-            LABKEY.Query.selectRows({
+            // TODO: ultimately replace this page with a better card view of the data:
+            var webpart = <%=webpartContext%>;
+            $('#' + webpart.wrapperDivId).append('<div id="' + webpart.wrapperDivId + '-studies"></div>')
+            LDK.Utils.getBasicQWP({
+                frame: 'portal',
+                title: 'List of Studies',
+                name: 'query',
                 schemaName: 'studies',
                 queryName: 'studies',
-                scope: this,
-                failure: LDK.Utils.getErrorCallback(),
-                success: function (results) {
-                    // TODO: render some sort of card/tile view
-                    //console.log(results)
-                }
-            })
+                maxRows: 20
+            }).render(webpart.wrapperDivId + '-studies');
+
+            // LABKEY.Query.selectRows({
+            //     schemaName: 'studies',
+            //     queryName: 'studies',
+            //     scope: this,
+            //     failure: LDK.Utils.getErrorCallback(),
+            //     success: function (results) {
+            //         // TODO: render some sort of card/tile view
+            //         //console.log(results)
+            //     }
+            // })
 
             LABKEY.Query.selectRows({
                 schemaName: 'study',
@@ -42,7 +54,6 @@
                         div.append('</ul>')
                     })
 
-                    var webpart = <%=webpartContext%>;
                     $('#' + webpart.wrapperDivId).append(div)
                 }
             })
@@ -52,7 +63,3 @@
 
 </script>
 
-Below is a list of the datasets managed in this folder.
-
-<br>
-