Test fix

bbimber · bbimber · commit b789e6e0d00c · 2024-03-07T11:53:27.000-08:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/analysis/PicardAlignmentMetricsHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/analysis/PicardAlignmentMetricsHandler.java
@@ -169,7 +169,7 @@ public void complete(PipelineJob job, List<SequenceOutputFile> inputs, List<Sequ
                 if (m != null)
                 {
                     job.getLogger().warn("processing analysis: " + m.getRowId());
-                    File outputDir = ((SequenceOutputHandlerJob)job).getAnalysisDirectory();
+                    File outputDir = ((SequenceOutputHandlerJob)job).getWebserverDir(false);
                     List<File> metricsFiles = new ArrayList<>();
 
                     File mf = new File(outputDir, FileUtil.getBaseName(o.getFile()) + ".summary.metrics");

Original file line number	Diff line number	Diff line change
`@@ -169,7 +169,7 @@ public void complete(PipelineJob job, List<SequenceOutputFile> inputs, List<Sequ`
`169`	`169`	`if (m != null)`
`170`	`170`	`{`
`171`	`171`	`job.getLogger().warn("processing analysis: " + m.getRowId());`
`172`		`- File outputDir = ((SequenceOutputHandlerJob)job).getAnalysisDirectory();`
	`172`	`+ File outputDir = ((SequenceOutputHandlerJob)job).getWebserverDir(false);`
`173`	`173`	`List<File> metricsFiles = new ArrayList<>();`
`174`	`174`
`175`	`175`	`File mf = new File(outputDir, FileUtil.getBaseName(o.getFile()) + ".summary.metrics");`