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Update download docs
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SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/BBMapWrapper.java

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@@ -227,7 +227,7 @@ public File doAlignment(File inputFastq1, @Nullable File inputFastq2, File outpu
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args.add("overwrite=t");
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// Maximum number of total alignments to print per read. Only relevant when secondary=t.
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args.add("maxsites=-1");
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args.add("maxsites=50");
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// Only print secondary alignments for ambiguously-mapped reads.
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args.add("secondary=t");

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