Fix typo in decoupleR

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisMaintenanceTask.java

@@ -63,7 +63,7 @@ public SequenceAnalysisMaintenanceTask()
     @Override
     public String getDescription()
     {
-        return "Delete SequenceAnalysis Artifacts";
+        return "SequenceAnalysis File Maintenance";
     }
 
     @Override
@@ -293,12 +293,12 @@ else if (sf.getFilePath() == null)
 
     private void processContainer(Container c, Logger log) throws IOException, PipelineJobException
     {
+        if (!c.isWorkbook())
+            log.info("processing container: " + c.getPath());
+
         PipeRoot root = PipelineService.get().getPipelineRootSetting(c);
         if (root != null && !root.isCloudRoot())
         {
-            if (!c.isWorkbook())
-                log.info("processing container: " + c.getPath());
-
             //first sequences
             File sequenceDir = new File(root.getRootPath(), ".sequences");
             TableInfo tableRefNtSequences = SequenceAnalysisSchema.getTable(SequenceAnalysisSchema.TABLE_REF_NT_SEQUENCES);

singlecell/resources/chunks/RunDecoupler.R

@@ -2,7 +2,7 @@ for (datasetId in names(seuratObjects)) {
     printName(datasetId)
     seuratObj <- readSeuratRDS(seuratObjects[[datasetId]])
 
-    seuratObj <- CellMembrane::RunDecoupler(seuratObj)
+    seuratObj <- CellMembrane::RunDecoupleR(seuratObj)
 
     saveData(seuratObj, datasetId)