Bugfix to nimble append

bbimber · bbimber · commit a569b4696dd1 · 2025-01-27T09:58:30.000-08:00
diff --git a/singlecell/src/org/labkey/singlecell/pipeline/singlecell/AppendNimble.java b/singlecell/src/org/labkey/singlecell/pipeline/singlecell/AppendNimble.java
@@ -124,7 +124,7 @@ protected Chunk createParamChunk(SequenceOutputHandler.JobContext ctx, List<Seur
             }
 
             int genomeId = arr.getInt(0);
-            String valStr = arr.get(3) == null ? null : StringUtils.trimToNull(String.valueOf(arr.get(2)));
+            String valStr = arr.get(3) == null ? null : StringUtils.trimToNull(String.valueOf(arr.get(3)));
             boolean val = Boolean.parseBoolean(valStr);
 
             ret.bodyLines.add("\t" + delim + "'" + genomeId + "' = " + (val ? "TRUE" : "FALSE"));
@@ -143,7 +143,7 @@ protected Chunk createParamChunk(SequenceOutputHandler.JobContext ctx, List<Seur
             }
 
             int genomeId = arr.getInt(0);
-            String valStr = arr.get(4) == null ? null : StringUtils.trimToNull(String.valueOf(arr.get(2)));
+            String valStr = arr.get(4) == null ? null : StringUtils.trimToNull(String.valueOf(arr.get(4)));
             boolean val = Boolean.parseBoolean(valStr);
 
             ret.bodyLines.add("\t" + delim + "'" + genomeId + "' = " + (val ? "TRUE" : "FALSE"));

Original file line number	Diff line number	Diff line change
`@@ -124,7 +124,7 @@ protected Chunk createParamChunk(SequenceOutputHandler.JobContext ctx, List<Seur`
`124`	`124`	`}`
`125`	`125`
`126`	`126`	`int genomeId = arr.getInt(0);`
`127`		`- String valStr = arr.get(3) == null ? null : StringUtils.trimToNull(String.valueOf(arr.get(2)));`
	`127`	`+ String valStr = arr.get(3) == null ? null : StringUtils.trimToNull(String.valueOf(arr.get(3)));`
`128`	`128`	`boolean val = Boolean.parseBoolean(valStr);`
`129`	`129`
`130`	`130`	`ret.bodyLines.add("\t" + delim + "'" + genomeId + "' = " + (val ? "TRUE" : "FALSE"));`
`@@ -143,7 +143,7 @@ protected Chunk createParamChunk(SequenceOutputHandler.JobContext ctx, List<Seur`
`143`	`143`	`}`
`144`	`144`
`145`	`145`	`int genomeId = arr.getInt(0);`
`146`		`- String valStr = arr.get(4) == null ? null : StringUtils.trimToNull(String.valueOf(arr.get(2)));`
	`146`	`+ String valStr = arr.get(4) == null ? null : StringUtils.trimToNull(String.valueOf(arr.get(4)));`
`147`	`147`	`boolean val = Boolean.parseBoolean(valStr);`
`148`	`148`
`149`	`149`	`ret.bodyLines.add("\t" + delim + "'" + genomeId + "' = " + (val ? "TRUE" : "FALSE"));`