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Fix typo
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SequenceAnalysis/src/org/labkey/sequenceanalysis/run/bampostprocessing/LofreqIndelQualStep.java

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -23,17 +23,17 @@ public LofreqIndelQualStep(PipelineStepProvider provider, PipelineContext ctx)
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super(provider, ctx, new LofreqAnalysis.LofreqWrapper(ctx.getLogger()));
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}
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public static class Provider extends AbstractPipelineStepProvider<MarkDuplicatesStep>
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public static class Provider extends AbstractPipelineStepProvider<LofreqIndelQualStep>
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{
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public Provider()
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{
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super("LofreqIndelQual", "Lofreq Indelqual", "Lofreq", "This runs lofreq's indelqual, which adds indel qualities necessary to call somatic indels.", Collections.emptyList(), null, "http://csb5.github.io/lofreq/");
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super("LofreqIndelQual", "Lofreq Indelqual", "Lofreq", "This runs lofreq indelqual, which adds indel qualities necessary to call somatic indels using lofreq", Collections.emptyList(), null, "http://csb5.github.io/lofreq/");
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}
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@Override
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public MarkDuplicatesStep create(PipelineContext ctx)
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public LofreqIndelQualStep create(PipelineContext ctx)
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{
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return new MarkDuplicatesStep(this, ctx);
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return new LofreqIndelQualStep(this, ctx);
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}
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}
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