Allow readset handlers to work with archived data

bbimber · bbimber · commit a3ad98106b8f · 2022-01-27T17:59:21.000-08:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/SequenceReadsetHandlerJob.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/SequenceReadsetHandlerJob.java
@@ -44,7 +44,7 @@ public SequenceReadsetHandlerJob(Container c, User user, @Nullable String jobNam
         _readsetIds = new ArrayList<>();
         for (SequenceReadsetImpl rs : readsets)
         {
-            getSequenceSupport().cacheReadset(rs);
+            getSequenceSupport().cacheReadset(rs, getHandler().supportsSraArchivedData());
             _readsetIds.add(rs.getReadsetId());
         }
     }

Original file line number	Diff line number	Diff line change
`@@ -44,7 +44,7 @@ public SequenceReadsetHandlerJob(Container c, User user, @Nullable String jobNam`
`44`	`44`	`_readsetIds = new ArrayList<>();`
`45`	`45`	`for (SequenceReadsetImpl rs : readsets)`
`46`	`46`	`{`
`47`		`- getSequenceSupport().cacheReadset(rs);`
	`47`	`+ getSequenceSupport().cacheReadset(rs, getHandler().supportsSraArchivedData());`
`48`	`48`	`_readsetIds.add(rs.getReadsetId());`
`49`	`49`	`}`
`50`	`50`	`}`