Fix typo

bbimber · bbimber · commit a3106930ac63 · 2022-02-03T06:35:23.000-08:00
diff --git a/singlecell/resources/chunks/RunCellHashing.R b/singlecell/resources/chunks/RunCellHashing.R
@@ -15,7 +15,7 @@ for (datasetId in names(seuratObjects)) {
                 addErrorMessage(paste0('Fraction failing cell hashing was : ', fractionFailedHashing, ' for dataset: ', datasetId, ', above threshold of: ', maxHashingPctFail))
             }
 
-            fractionDiscordantHashing <- 1 - (sum(seuratObj@meta.data$HTO.Classification == 'Discordant') / nrow(seuratObj@meta.data))
+            fractionDiscordantHashing <- sum(seuratObj@meta.data$HTO.Classification == 'Discordant') / nrow(seuratObj@meta.data)
             if (!is.null(maxHashingPctDiscordant) && fractionDiscordantHashing > maxHashingPctDiscordant) {
                 addErrorMessage(paste0('Discordant hashing rate was: ', fractionDiscordantHashing, ' for dataset: ', datasetId, ', above threshold of: ', maxHashingPctDiscordant))
             }

Original file line number	Diff line number	Diff line change
`@@ -15,7 +15,7 @@ for (datasetId in names(seuratObjects)) {`
`15`	`15`	`addErrorMessage(paste0('Fraction failing cell hashing was : ', fractionFailedHashing, ' for dataset: ', datasetId, ', above threshold of: ', maxHashingPctFail))`
`16`	`16`	`}`
`17`	`17`
`18`		`- fractionDiscordantHashing <- 1 - (sum(seuratObj@meta.data$HTO.Classification == 'Discordant') / nrow(seuratObj@meta.data))`
	`18`	`+ fractionDiscordantHashing <- sum(seuratObj@meta.data$HTO.Classification == 'Discordant') / nrow(seuratObj@meta.data)`
`19`	`19`	`if (!is.null(maxHashingPctDiscordant) && fractionDiscordantHashing > maxHashingPctDiscordant) {`
`20`	`20`	`addErrorMessage(paste0('Discordant hashing rate was: ', fractionDiscordantHashing, ' for dataset: ', datasetId, ', above threshold of: ', maxHashingPctDiscordant))`
`21`	`21`	`}`