Merge 21.11 to 22.3

Author: labkey-tchad

SequenceAnalysis/build.gradle

@@ -10,6 +10,7 @@ import java.util.regex.Matcher
 
 repositories {
     mavenCentral()
+    // Added for org.clojars.chapmanb:sam dependency required by com.github.samtools:htsjdk
     maven {
         url "https://clojars.org/repo"
     }

jbrowse/build.gradle

@@ -1,7 +1,11 @@
 import org.labkey.gradle.util.BuildUtils;
 
 repositories {
-	mavenCentral()
+    mavenCentral()
+    // Added for org.clojars.chapmanb:sam dependency required by com.github.samtools:htsjdk
+    maven {
+        url "https://clojars.org/repo"
+    }
 	// Added for opencharts dependency (required by biojava)
 	maven {
 		url "https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/"
@@ -19,4 +23,4 @@ dependencies {
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:LabDevKitModules:LDK", depProjectConfig: "published", depExtension: "module")
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: ":server:modules:DiscvrLabKeyModules:SequenceAnalysis", depProjectConfig: "published", depExtension: "module")
     BuildUtils.addLabKeyDependency(project: project, config: "modules", depProjectPath: BuildUtils.getPlatformModuleProjectPath(project.gradle, "pipeline"), depProjectConfig: "published", depExtension: "module")
-}
+}