Update genome name used in test

Author: bbimber

SequenceAnalysis/resources/web/SequenceAnalysis/panel/SequenceImportPanel.js

@@ -472,7 +472,7 @@ Ext4.define('SequenceAnalysis.panel.SequenceImportPanel', {
                     m.set('fileRecord1', rec.get('id'));
                     var fileArr = rec.get('fileName').replace(/\.gz$/, '').split('.');
                     fileArr.pop();
-                    var fileGroupId = fileArr.length == 1 ? fileArr[0] : fileArr.join('.');
+                    var fileGroupId = fileArr.length === 1 ? fileArr[0] : fileArr.join('.');
                     m.set('fileGroupId', fileGroupId);
                     //m.set('platformUnit', fileGroupId);
 
@@ -607,6 +607,7 @@ Ext4.define('SequenceAnalysis.panel.SequenceImportPanel', {
         map[sample] = map[sample] || {};
         map[sample][setId] = map[sample][setId] || [];
 
+        //NOTE: this likely will be a string
         if (readSet == 1){
             var m = Ext4.create('SequenceAnalysis.model.ReadsetDataModel', {});
             m.set('fileRecord1', rec.get('id'));

SequenceAnalysis/test/src/org/labkey/test/tests/external/labModules/SequenceTest.java

@@ -1541,7 +1541,7 @@ private static File replaceContigName(File input, File output, String genomeName
             String line;
             while ((line = reader.readLine()) != null)
             {
-                writer.println(line.replaceAll("SIVmac239", "SIVmac239_Test"));
+                writer.println(line.replaceAll("SIVmac239", genomeName));
             }
         }