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1 parent 05f1491 commit 9c198daCopy full SHA for 9c198da
singlecell/resources/chunks/ClrNormalizeByGroup.R
@@ -1,7 +1,7 @@
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for (datasetId in names(seuratObjects)) {
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printName(datasetId)
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seuratObj <- readRDS(seuratObjects[[datasetId]])
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- seuratObj <- CellMembrane::ClrNormalizeByGroup(seuratObj, groupingVar = groupingVar, assayName = assayName, targetAssayName = targetAssayName, margin = margin, minCellsPerGroup = minCellsPerGroup, calculatePerFeatureUCell = calculatePerFeatureUCell, featureWhitelist = featureWhitelist, featureExclusionList = featureExclusionList)
+ seuratObj <- CellMembrane::ClrNormalizeByGroup(seuratObj, groupingVar = groupingVar, assayName = assayName, targetAssayName = targetAssayName, margin = margin, minCellsPerGroup = minCellsPerGroup, calculatePerFeatureUCell = calculatePerFeatureUCell, featureInclusionList = featureWhitelist, featureExclusionList = featureExclusionList)
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saveData(seuratObj, datasetId)
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