Update paths to SequenceAnalysis sample data (#2)

Author: labkey-tchad

SequenceAnalysis/test/src/org/labkey/test/tests/external/labModules/SequenceTest.java

@@ -82,7 +82,7 @@ public class SequenceTest extends BaseWebDriverTest
 {
     protected LabModuleHelper _helper = new LabModuleHelper(this);
     protected String _pipelineRoot = null;
-    private static final File _sampleData = new File(TestFileUtils.getLabKeyRoot(), "server/modules/DiscvrLabKeyModules/SequenceAnalysis/resources/sampleData");
+    public static final File _sampleData = new File(TestFileUtils.getLabKeyRoot(), "server/modules/DiscvrLabKeyModules/SequenceAnalysis/resources/sampleData");
     protected final String _readsetPipelineName = "Import sequence data";
     protected final String _alignmentImportPipelineName = "Import Alignment(s)";
 
@@ -1578,13 +1578,7 @@ public static void addOutputFile(BaseWebDriverTest test, File toAdd, String geno
 
     private void basicOutputFilesTest(boolean sequencePipelineEnabled) throws Exception
     {
-        File testBamSource = new File(TestFileUtils.getLabKeyRoot(),
-                File.separatorChar + "externalModules" +
-                        File.separatorChar + "labModules" +
-                        File.separatorChar + "SequenceAnalysis" +
-                        File.separatorChar + "resources" +
-                        File.separatorChar + "sampleData" +
-                        File.separatorChar + "test.bam");
+        File testBamSource = new File(_sampleData, "test.bam");
 
         if (!testBamSource.exists())
         {

jbrowse/test/src/org/labkey/test/tests/external/labModules/JBrowseTest.java

@@ -216,7 +216,7 @@ private void testOutputFileProcessing() throws Exception
             SequenceTest.addOutputFile(this, f, SequenceTest.TEST_GENOME_NAME, f.getName(), "Gene Annotations", "This is an output file", false);
         }
 
-        File testBam = new File(TestFileUtils.getLabKeyRoot(), "/externalModules/labModules/SequenceAnalysis/resources/sampleData/test.bam");
+        File testBam = new File(SequenceTest._sampleData, "test.bam");
         SequenceTest.addOutputFile(this, testBam, SequenceTest.TEST_GENOME_NAME, "TestBAM", "BAM File", "This is an output file", false);
 
         //create session w/ some of these, verify