Allow seurat handler to process RDS files without seurat.rds extension

bbimber · bbimber · commit 9abcc10100e1 · 2022-03-18T14:51:53.000-07:00
diff --git a/singlecell/src/org/labkey/singlecell/analysis/ProcessSeuratObjectHandler.java b/singlecell/src/org/labkey/singlecell/analysis/ProcessSeuratObjectHandler.java
@@ -24,7 +24,7 @@ public String getName()
     @Override
     public boolean canProcess(SequenceOutputFile f)
     {
-        return f.getFile() != null && SEURAT_TYPE.isType(f.getFile());
+        return f.getFile() != null && (SEURAT_TYPE.isType(f.getFile()) || "Seurat Object".equals(f.getCategory()));
     }
 
     @Override

Original file line number	Diff line number	Diff line change
`@@ -24,7 +24,7 @@ public String getName()`
`24`	`24`	`@Override`
`25`	`25`	`public boolean canProcess(SequenceOutputFile f)`
`26`	`26`	`{`
`27`		`- return f.getFile() != null && SEURAT_TYPE.isType(f.getFile());`
	`27`	`+ return f.getFile() != null && (SEURAT_TYPE.isType(f.getFile()) \|\| "Seurat Object".equals(f.getCategory()));`
`28`	`28`	`}`
`29`	`29`
`30`	`30`	`@Override`