Add logging

bbimber · bbimber · commit 94d4e91c5c03 · 2024-03-23T19:54:21.000-07:00
diff --git a/singlecell/resources/chunks/CalculateGeneComponentScores.R b/singlecell/resources/chunks/CalculateGeneComponentScores.R
@@ -3,6 +3,7 @@ for (datasetId in names(seuratObjects)) {
     seuratObj <- readSeuratRDS(seuratObjects[[datasetId]])
 
     for (sc in savedComponent) {
+        logger::log_info(paste0('Processing ', datasetId, ' for ', sc))
         seuratObj <- RIRA::ScoreUsingSavedComponent(seuratObj, componentOrName = sc, fieldName = sc)
     }
 

Original file line number	Diff line number	Diff line change
`@@ -3,6 +3,7 @@ for (datasetId in names(seuratObjects)) {`
`3`	`3`	`seuratObj <- readSeuratRDS(seuratObjects[[datasetId]])`
`4`	`4`
`5`	`5`	`for (sc in savedComponent) {`
	`6`	`+ logger::log_info(paste0('Processing ', datasetId, ' for ', sc))`
`6`	`7`	`seuratObj <- RIRA::ScoreUsingSavedComponent(seuratObj, componentOrName = sc, fieldName = sc)`
`7`	`8`	`}`
`8`	`9`