Bugfix character->string

bbimber · bbimber · commit 943b89df13f0 · 2020-09-14T14:49:36.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/MergeLoFreqVcfHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/MergeLoFreqVcfHandler.java
@@ -365,11 +365,11 @@ public void processFilesRemote(List<SequenceOutputFile> inputFiles, JobContext c
                                     if ("D".equals(line[0]))
                                     {
                                         length = end1 - Integer.parseInt(line[2]);  //NOTE: pindel reports one base upstream+downstream as part of the indel
-                                        alt = String.valueOf(rs.getBases()[start0]);
+                                        alt = Character.toString(rs.getBases()[start0]);
                                     }
                                     else if ("I".equals(line[0]))
                                     {
-                                        alt = (char)rs.getBases()[start0] + line[7];
+                                        alt = Character.toString(rs.getBases()[start0]) + line[7];
                                         length = alt.length();
                                     }
 

Original file line number	Diff line number	Diff line change
`@@ -365,11 +365,11 @@ public void processFilesRemote(List<SequenceOutputFile> inputFiles, JobContext c`
`365`	`365`	`if ("D".equals(line[0]))`
`366`	`366`	`{`
`367`	`367`	`length = end1 - Integer.parseInt(line[2]); //NOTE: pindel reports one base upstream+downstream as part of the indel`
`368`		`- alt = String.valueOf(rs.getBases()[start0]);`
	`368`	`+ alt = Character.toString(rs.getBases()[start0]);`
`369`	`369`	`}`
`370`	`370`	`else if ("I".equals(line[0]))`
`371`	`371`	`{`
`372`		`- alt = (char)rs.getBases()[start0] + line[7];`
	`372`	`+ alt = Character.toString(rs.getBases()[start0]) + line[7];`
`373`	`373`	`length = alt.length();`
`374`	`374`	`}`
`375`	`375`