Bugfix to plink filtering

bbimber · bbimber · commit 93bcb7b6ac32 · 2022-10-05T13:09:58.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/PlinkPcaStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/PlinkPcaStep.java
@@ -205,7 +205,7 @@ public void init(PipelineJob job, SequenceAnalysisJobSupport support, List<Seque
     {
         boolean splitByApplication = getProvider().getParameterByName("splitByApplication").extractValue(getPipelineCtx().getJob(), getProvider(), getStepIdx(), Boolean.class, true);
         List<String> allowableApplications = null;
-        String allowableApplicationsRaw = StringUtils.trimToNull(getProvider().getParameterByName("splitByApplication").extractValue(getPipelineCtx().getJob(), getProvider(), getStepIdx()));
+        String allowableApplicationsRaw = StringUtils.trimToNull(getProvider().getParameterByName("allowableApplications").extractValue(getPipelineCtx().getJob(), getProvider(), getStepIdx()));
         if (allowableApplicationsRaw != null)
         {
             allowableApplications = Arrays.asList(allowableApplicationsRaw.split(";"));

Original file line number	Diff line number	Diff line change
`@@ -205,7 +205,7 @@ public void init(PipelineJob job, SequenceAnalysisJobSupport support, List<Seque`
`205`	`205`	`{`
`206`	`206`	`boolean splitByApplication = getProvider().getParameterByName("splitByApplication").extractValue(getPipelineCtx().getJob(), getProvider(), getStepIdx(), Boolean.class, true);`
`207`	`207`	`List<String> allowableApplications = null;`
`208`		`- String allowableApplicationsRaw = StringUtils.trimToNull(getProvider().getParameterByName("splitByApplication").extractValue(getPipelineCtx().getJob(), getProvider(), getStepIdx()));`
	`208`	`+ String allowableApplicationsRaw = StringUtils.trimToNull(getProvider().getParameterByName("allowableApplications").extractValue(getPipelineCtx().getJob(), getProvider(), getStepIdx()));`
`209`	`209`	`if (allowableApplicationsRaw != null)`
`210`	`210`	`{`
`211`	`211`	`allowableApplications = Arrays.asList(allowableApplicationsRaw.split(";"));`