Stronger filtering on TCR data

bbimber · bbimber · commit 920d9528ca05 · 2020-08-18T12:21:01.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/MergeLoFreqVcfHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/MergeLoFreqVcfHandler.java
@@ -464,7 +464,7 @@ public void processFilesRemote(List<SequenceOutputFile> inputFiles, JobContext c
                             }
                         }
 
-                        if (idx % 500 == 0)
+                        if (idx % 100000 == 0)
                         {
                             ctx.getLogger().info("Total sites written: " + idx);
                         }

Original file line number	Diff line number	Diff line change
`@@ -464,7 +464,7 @@ public void processFilesRemote(List<SequenceOutputFile> inputFiles, JobContext c`
`464`	`464`	`}`
`465`	`465`	`}`
`466`	`466`
`467`		`- if (idx % 500 == 0)`
	`467`	`+ if (idx % 100000 == 0)`
`468`	`468`	`{`
`469`	`469`	`ctx.getLogger().info("Total sites written: " + idx);`
`470`	`470`	`}`