Support RDS for sequence file import

bbimber · bbimber · commit 91e2284342bf · 2022-03-18T16:12:31.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/util/SequenceOutputFileType.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/util/SequenceOutputFileType.java
@@ -11,6 +11,6 @@ public class SequenceOutputFileType extends FileType
 {
     public SequenceOutputFileType()
     {
-        super(Arrays.asList(".bam", ".gff", ".gtf", ".bed", ".vcf"), ".bed", FileType.gzSupportLevel.SUPPORT_GZ);
+        super(Arrays.asList(".bam", ".gff", ".gtf", ".bed", ".vcf", ".rds"), ".bed", FileType.gzSupportLevel.SUPPORT_GZ);
     }
 }
diff --git a/singlecell/src/org/labkey/singlecell/analysis/ProcessSeuratObjectHandler.java b/singlecell/src/org/labkey/singlecell/analysis/ProcessSeuratObjectHandler.java
@@ -13,7 +13,7 @@
 
 public class ProcessSeuratObjectHandler extends AbstractSingleCellHandler implements SequenceOutputHandler<SequenceOutputHandler.SequenceOutputProcessor>, SequenceOutputHandler.HasActionNames
 {
-    private static FileType SEURAT_TYPE = new FileType("seurat.rds", false);
+    private static final FileType SEURAT_TYPE = new FileType("seurat.rds", false);
 
     @Override
     public String getName()

Original file line number	Diff line number	Diff line change
`@@ -11,6 +11,6 @@ public class SequenceOutputFileType extends FileType`
`11`	`11`	`{`
`12`	`12`	`public SequenceOutputFileType()`
`13`	`13`	`{`
`14`		`- super(Arrays.asList(".bam", ".gff", ".gtf", ".bed", ".vcf"), ".bed", FileType.gzSupportLevel.SUPPORT_GZ);`
	`14`	`+ super(Arrays.asList(".bam", ".gff", ".gtf", ".bed", ".vcf", ".rds"), ".bed", FileType.gzSupportLevel.SUPPORT_GZ);`
`15`	`15`	`}`
`16`	`16`	`}`
Original file line number	Diff line number	Diff line change
`@@ -13,7 +13,7 @@`
`13`	`13`
`14`	`14`	`public class ProcessSeuratObjectHandler extends AbstractSingleCellHandler implements SequenceOutputHandler<SequenceOutputHandler.SequenceOutputProcessor>, SequenceOutputHandler.HasActionNames`
`15`	`15`	`{`
`16`		`- private static FileType SEURAT_TYPE = new FileType("seurat.rds", false);`
	`16`	`+ private static final FileType SEURAT_TYPE = new FileType("seurat.rds", false);`
`17`	`17`
`18`	`18`	`@Override`
`19`	`19`	`public String getName()`