Add clojars repo to support sequence analysis dependency

bbimber · bbimber · commit 8cbaef3c23eb · 2022-05-28T07:04:00.000-07:00
diff --git a/SequenceAnalysis/build.gradle b/SequenceAnalysis/build.gradle
@@ -96,7 +96,7 @@ dependencies {
     BuildUtils.addExternalDependency(
             project,
             new ExternalDependency(
-                    'org.clojars.chapmanb:sam:1.107',
+                    'org.clojars.chapmanb:sam:1.96',
                     'picard tools',
                     'picard tools',
                     'http://sourceforge.net/projects/picard/',
diff --git a/jbrowse/build.gradle b/jbrowse/build.gradle
@@ -6,6 +6,10 @@ repositories {
 	maven {
 		url "https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/"
 	}
+	// Added to support ancient sam JAR needed by FASTQC (in sequenceanalysis)
+	maven {
+		url "https://clojars.org/repo"
+	}
 }
 
 dependencies {

Original file line number	Diff line number	Diff line change
`@@ -6,6 +6,10 @@ repositories {`
`6`	`6`	`maven {`
`7`	`7`	`url "https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/"`
`8`	`8`	`}`
	`9`	`+ // Added to support ancient sam JAR needed by FASTQC (in sequenceanalysis)`
	`10`	`+ maven {`
	`11`	`+ url "https://clojars.org/repo"`
	`12`	`+ }`
`9`	`13`	`}`
`10`	`14`
`11`	`15`	`dependencies {`