Fix typo in label

bbimber · bbimber · commit 8c681fde2404 · 2021-06-04T10:52:47.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VcfComparisonStep.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/variant/VcfComparisonStep.java
@@ -57,7 +57,7 @@ public VcfComparisonStep create(PipelineContext ctx)
     public Output processVariants(File inputVCF, File outputDirectory, ReferenceGenome genome, @Nullable List<Interval> intervals) throws PipelineJobException
     {
         VariantProcessingStepOutputImpl output = new VariantProcessingStepOutputImpl();
-        getPipelineCtx().getLogger().info("Running SNPEff");
+        getPipelineCtx().getLogger().info("Running VcfComparison");
 
         Integer refFileId = getProvider().getParameterByName(REF_VCF).extractValue(getPipelineCtx().getJob(), getProvider(), getStepIdx(), Integer.class);
         File refVcf = getPipelineCtx().getSequenceSupport().getCachedData(refFileId);

Original file line number	Diff line number	Diff line change
`@@ -57,7 +57,7 @@ public VcfComparisonStep create(PipelineContext ctx)`
`57`	`57`	`public Output processVariants(File inputVCF, File outputDirectory, ReferenceGenome genome, @Nullable List<Interval> intervals) throws PipelineJobException`
`58`	`58`	`{`
`59`	`59`	`VariantProcessingStepOutputImpl output = new VariantProcessingStepOutputImpl();`
`60`		`- getPipelineCtx().getLogger().info("Running SNPEff");`
	`60`	`+ getPipelineCtx().getLogger().info("Running VcfComparison");`
`61`	`61`
`62`	`62`	`Integer refFileId = getProvider().getParameterByName(REF_VCF).extractValue(getPipelineCtx().getJob(), getProvider(), getStepIdx(), Integer.class);`
`63`	`63`	`File refVcf = getPipelineCtx().getSequenceSupport().getCachedData(refFileId);`