Add stubs of various files for MCC

bbimber · bbimber · commit 8ad5f3c6a07b · 2021-02-04T14:28:24.000-08:00
diff --git a/singlecell/src/org/labkey/singlecell/pipeline/singlecell/AppendCiteSeq.java b/singlecell/src/org/labkey/singlecell/pipeline/singlecell/AppendCiteSeq.java
@@ -121,7 +121,7 @@ protected Map<Integer, File> prepareCountData(SingleCellOutput output, SequenceO
 
                 try
                 {
-                    FileUtils.copyFile(validAdt, getAdtMetadata(finalOutput));
+                    FileUtils.copyFile(validAdt, getAdtMetadata(finalOutput.getParentFile()));
                 }
                 catch (IOException e)
                 {

Original file line number	Diff line number	Diff line change
`@@ -121,7 +121,7 @@ protected Map<Integer, File> prepareCountData(SingleCellOutput output, SequenceO`
`121`	`121`
`122`	`122`	`try`
`123`	`123`	`{`
`124`		`- FileUtils.copyFile(validAdt, getAdtMetadata(finalOutput));`
	`124`	`+ FileUtils.copyFile(validAdt, getAdtMetadata(finalOutput.getParentFile()));`
`125`	`125`	`}`
`126`	`126`	`catch (IOException e)`
`127`	`127`	`{`