Bugfix to cellranger VDJ

bbimber · bbimber · commit 8a795a469101 · 2024-07-30T21:33:02.000-07:00
diff --git a/singlecell/src/org/labkey/singlecell/run/CellRangerVDJWrapper.java b/singlecell/src/org/labkey/singlecell/run/CellRangerVDJWrapper.java
@@ -84,7 +84,7 @@ public VDJProvider()
                     ToolParameterDescriptor.create(INNER_ENRICHMENT_PRIMERS, "Inner Enrichment Primers", "An option comma-separated list of the inner primers used for TCR enrichment. These will be used for trimming.", "textarea", new JSONObject(){{
                         put("height", 100);
                         put("width", 400);
-                    }}, null),
+                    }}, null)
                 ), null, "https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger", true, false, false, ALIGNMENT_MODE.MERGE_THEN_ALIGN);
         }
 

Original file line number	Diff line number	Diff line change
`@@ -84,7 +84,7 @@ public VDJProvider()`
`84`	`84`	`ToolParameterDescriptor.create(INNER_ENRICHMENT_PRIMERS, "Inner Enrichment Primers", "An option comma-separated list of the inner primers used for TCR enrichment. These will be used for trimming.", "textarea", new JSONObject(){{`
`85`	`85`	`put("height", 100);`
`86`	`86`	`put("width", 400);`
`87`		`- }}, null),`
	`87`	`+ }}, null)`
`88`	`88`	`), null, "https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger", true, false, false, ALIGNMENT_MODE.MERGE_THEN_ALIGN);`
`89`	`89`	`}`
`90`	`90`