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Add missing arguments
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‎singlecell/resources/chunks/ClrNormalizeByGroup.R‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -3,7 +3,7 @@ for (datasetId in names(seuratObjects)) {
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seuratObj <- readRDS(seuratObjects[[datasetId]])
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gc()
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seuratObj <- CellMembrane::ClrNormalizeByGroup(seuratObj, groupingVar = groupingVar, assayName = assayName, targetAssayName = targetAssayName, margin = margin, minCellsPerGroup = minCellsPerGroup, calculatePerFeatureUCell = calculatePerFeatureUCell)
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seuratObj <- CellMembrane::ClrNormalizeByGroup(seuratObj, groupingVar = groupingVar, assayName = assayName, targetAssayName = targetAssayName, margin = margin, minCellsPerGroup = minCellsPerGroup, calculatePerFeatureUCell = calculatePerFeatureUCell, featureWhitelist = featureWhitelist, featureExclusionList = featureExclusionList)
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saveData(seuratObj, datasetId)
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