Avoid double parsing error

bbimber · bbimber · commit 86d520a29ba5 · 2021-08-17T17:05:14.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/PangolinHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/PangolinHandler.java
@@ -160,7 +160,7 @@ public void processFilesOnWebserver(PipelineJob job, SequenceAnalysisJobSupport
                         row2.put("analysis_id", so.getAnalysis_id());
                         row2.put("category", "Pangolin");
                         row2.put("metricName", "PangolinConflicts");
-                        row2.put("value", Double.parseDouble(line[2]));
+                        row2.put("qualvalue", line[2]);
                         row2.put("container", so.getContainer());
                         if (StringUtils.trimToNull(line[4]) != null)
                         {

Original file line number	Diff line number	Diff line change
`@@ -160,7 +160,7 @@ public void processFilesOnWebserver(PipelineJob job, SequenceAnalysisJobSupport`
`160`	`160`	`row2.put("analysis_id", so.getAnalysis_id());`
`161`	`161`	`row2.put("category", "Pangolin");`
`162`	`162`	`row2.put("metricName", "PangolinConflicts");`
`163`		`- row2.put("value", Double.parseDouble(line[2]));`
	`163`	`+ row2.put("qualvalue", line[2]);`
`164`	`164`	`row2.put("container", so.getContainer());`
`165`	`165`	`if (StringUtils.trimToNull(line[4]) != null)`
`166`	`166`	`{`