More informative logging after filter

bbimber · bbimber · commit 845468926fb0 · 2022-03-24T13:21:52.000-07:00
diff --git a/singlecell/resources/chunks/CommonFilters.R b/singlecell/resources/chunks/CommonFilters.R
@@ -101,7 +101,7 @@ for (datasetId in names(seuratObjects)) {
 				seuratObj <- NULL
 			} else {
 				seuratObj <- subset(seuratObj, cells = cells)
-				print(paste0('Cells after subset: ', ncol(seuratObj)))
+				print(paste0('After removing cells without hashing: ', ncol(seuratObj)))
 			}
 		}, error = function(e){
 			if (!is.null(e) && e$message == 'Cannot find cells provided') {

Original file line number	Diff line number	Diff line change
`@@ -101,7 +101,7 @@ for (datasetId in names(seuratObjects)) {`
`101`	`101`	`seuratObj <- NULL`
`102`	`102`	`} else {`
`103`	`103`	`seuratObj <- subset(seuratObj, cells = cells)`
`104`		`- print(paste0('Cells after subset: ', ncol(seuratObj)))`
	`104`	`+ print(paste0('After removing cells without hashing: ', ncol(seuratObj)))`
`105`	`105`	`}`
`106`	`106`	`}, error = function(e){`
`107`	`107`	`if (!is.null(e) && e$message == 'Cannot find cells provided') {`