Smarter resume with nimble

bbimber · bbimber · commit 825648d3476f · 2025-05-01T14:25:12.000-07:00
diff --git a/singlecell/src/org/labkey/singlecell/run/NimbleHelper.java b/singlecell/src/org/labkey/singlecell/run/NimbleHelper.java
@@ -538,7 +538,7 @@ public static File runNimbleReport(File alignResultsGz, int genomeId, PipelineSt
         reportArgs.add("-o");
         reportArgs.add(reportResultsGz.getPath());
 
-        runUsingDocker(reportArgs, output, null, ctx);
+        runUsingDocker(reportArgs, output, "nimble.report." + genomeId, ctx);
 
         if (!reportResultsGz.exists())
         {
@@ -566,7 +566,7 @@ public static File runNimbleReport(File alignResultsGz, int genomeId, PipelineSt
             plotArgs.add("--output_file");
             plotArgs.add(plotResultsHtml.getPath());
 
-            runUsingDocker(plotArgs, output, null, ctx);
+            runUsingDocker(plotArgs, output, "nimble.plot." + genomeId, ctx);
 
             if (!plotResultsHtml.exists())
             {

Original file line number	Diff line number	Diff line change
`@@ -538,7 +538,7 @@ public static File runNimbleReport(File alignResultsGz, int genomeId, PipelineSt`
`538`	`538`	`reportArgs.add("-o");`
`539`	`539`	`reportArgs.add(reportResultsGz.getPath());`
`540`	`540`
`541`		`- runUsingDocker(reportArgs, output, null, ctx);`
	`541`	`+ runUsingDocker(reportArgs, output, "nimble.report." + genomeId, ctx);`
`542`	`542`
`543`	`543`	`if (!reportResultsGz.exists())`
`544`	`544`	`{`
`@@ -566,7 +566,7 @@ public static File runNimbleReport(File alignResultsGz, int genomeId, PipelineSt`
`566`	`566`	`plotArgs.add("--output_file");`
`567`	`567`	`plotArgs.add(plotResultsHtml.getPath());`
`568`	`568`
`569`		`- runUsingDocker(plotArgs, output, null, ctx);`
	`569`	`+ runUsingDocker(plotArgs, output, "nimble.plot." + genomeId, ctx);`
`570`	`570`
`571`	`571`	`if (!plotResultsHtml.exists())`
`572`	`572`	`{`