Update argument name

bbimber · bbimber · commit 81938535a79d · 2025-02-18T10:20:51.000-08:00
diff --git a/singlecell/resources/chunks/AppendNimble.R b/singlecell/resources/chunks/AppendNimble.R
@@ -19,7 +19,7 @@ for (datasetId in names(seuratObjects)) {
   for (genomeId in names(nimbleGenomes)) {
     maxAmbiguityAllowed <- nimbleGenomeAmbiguousPreference[[genomeId]]
     replaceExistingAssayData <- replaceExistingAssayDataByGenome[[genomeId]]
-    seuratObj <- Rdiscvr::DownloadAndAppendNimble(seuratObject = seuratObj, allowableGenomes = genomeId, ensureSamplesShareAllGenomes = ensureSamplesShareAllGenomes, targetAssayName = nimbleGenomes[[genomeId]], enforceUniqueFeatureNames = TRUE, maxAmbiguityAllowed = maxAmbiguityAllowed, maxLibrarySizeRatio = maxLibrarySizeRatio, replaceExistingAssayData = replaceExistingAssayData)
+    seuratObj <- Rdiscvr::DownloadAndAppendNimble(seuratObj = seuratObj, allowableGenomes = genomeId, ensureSamplesShareAllGenomes = ensureSamplesShareAllGenomes, targetAssayName = nimbleGenomes[[genomeId]], enforceUniqueFeatureNames = TRUE, maxAmbiguityAllowed = maxAmbiguityAllowed, maxLibrarySizeRatio = maxLibrarySizeRatio, replaceExistingAssayData = replaceExistingAssayData)
   }
 
   saveData(seuratObj, datasetId)

Original file line number	Diff line number	Diff line change
`@@ -19,7 +19,7 @@ for (datasetId in names(seuratObjects)) {`
`19`	`19`	`for (genomeId in names(nimbleGenomes)) {`
`20`	`20`	`maxAmbiguityAllowed <- nimbleGenomeAmbiguousPreference[[genomeId]]`
`21`	`21`	`replaceExistingAssayData <- replaceExistingAssayDataByGenome[[genomeId]]`
`22`		`- seuratObj <- Rdiscvr::DownloadAndAppendNimble(seuratObject = seuratObj, allowableGenomes = genomeId, ensureSamplesShareAllGenomes = ensureSamplesShareAllGenomes, targetAssayName = nimbleGenomes[[genomeId]], enforceUniqueFeatureNames = TRUE, maxAmbiguityAllowed = maxAmbiguityAllowed, maxLibrarySizeRatio = maxLibrarySizeRatio, replaceExistingAssayData = replaceExistingAssayData)`
	`22`	`+ seuratObj <- Rdiscvr::DownloadAndAppendNimble(seuratObj = seuratObj, allowableGenomes = genomeId, ensureSamplesShareAllGenomes = ensureSamplesShareAllGenomes, targetAssayName = nimbleGenomes[[genomeId]], enforceUniqueFeatureNames = TRUE, maxAmbiguityAllowed = maxAmbiguityAllowed, maxLibrarySizeRatio = maxLibrarySizeRatio, replaceExistingAssayData = replaceExistingAssayData)`
`23`	`23`	`}`
`24`	`24`
`25`	`25`	`saveData(seuratObj, datasetId)`