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Remove flags from bcftools install
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SequenceAnalysis/pipeline_code/sequence_tools_install.sh

Lines changed: 1 addition & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -512,13 +512,12 @@ then
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wget $WGET_OPTS https://github.com/samtools/bcftools/releases/download/1.18/bcftools-1.18.tar.bz2
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tar xjvf bcftools-1.18.tar.bz2
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bzip2 bcftools-1.18.tar
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chmod 755 bcftools-1.18
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cd bcftools-1.18
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rm -f plugins/liftover.c
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wget $WGET_OPTS -P plugins https://raw.githubusercontent.com/freeseek/score/master/liftover.c
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./configure CFLAGS="-g -Wall -O2 -std=c99"
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./configure
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make
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install ./bcftools $LKTOOLS_DIR

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