Remove no longer used config

Author: bbimber

SequenceAnalysis/build.gradle

@@ -49,10 +49,8 @@ if (project.findProject(BuildUtils.getTestProjectPath(project.gradle)) != null &
             String newLine = line
             while (matcher.find())
             {
-               if (matcher.group(1).equals("SEQUENCEANALYSIS_CODELOCATION") || matcher.group(1).equals("SEQUENCEANALYSIS_TOOLS"))
+               if (matcher.group(1).equals("SEQUENCEANALYSIS_TOOLS"))
                   newLine = newLine.replace(matcher.group(), extension.getTeamCityProperty("additional.pipeline.tools"))
-               else if (matcher.group(1).equals("SEQUENCEANALYSIS_EXTERNALDIR"))
-                  newLine = newLine.replace(matcher.group(), project.file("pipeline_code/external").getAbsolutePath())
             }
             return newLine
 

SequenceAnalysis/test/configs/pipelineConfig.xml

@@ -8,12 +8,6 @@
             <bean class="org.labkey.pipeline.api.properties.ConfigPropertiesImpl">
                 <property name="softwarePackages">
                     <map>
-                        <!--This is the path to the checked out copy of the SequenceAnalysis perl code.
-                            sequence_tools_install.sh would have placed this in the path below-->
-                        <entry key="SEQUENCEANALYSIS_CODELOCATION" value="@@SEQUENCEANALYSIS_CODELOCATION@@"/>
-                        <!--This is the path where the /external directory from the SequenceAnalysis module is checked out.
-                            This contains several JARs.  sequence_tools_install.sh would have placed these in the path below-->
-                        <entry key="SEQUENCEANALYSIS_EXTERNALDIR" value="@@SEQUENCEANALYSIS_EXTERNALDIR@@"/>
                         <!--If the sequence tools are not in the standard pipeline tools dir, this is required.
                             These are the external binaries installed by sequence_tools_install.sh-->
                         <entry key="SEQUENCEANALYSIS_TOOLS" value="@@SEQUENCEANALYSIS_TOOLS@@"/>