Correct sawfish argument

bbimber · bbimber · commit 6b1801611e54 · 2025-07-10T16:12:53.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/SawfishAnalysis.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/SawfishAnalysis.java
@@ -61,7 +61,7 @@ public Output performAnalysisPerSampleRemote(Readset rs, File inputBam, Referenc
         Integer maxThreads = SequencePipelineService.get().getMaxThreads(getPipelineCtx().getLogger());
         if (maxThreads != null)
         {
-            args.add("-threads");
+            args.add("--threads");
             args.add(String.valueOf(maxThreads));
         }
 

Original file line number	Diff line number	Diff line change
`@@ -61,7 +61,7 @@ public Output performAnalysisPerSampleRemote(Readset rs, File inputBam, Referenc`
`61`	`61`	`Integer maxThreads = SequencePipelineService.get().getMaxThreads(getPipelineCtx().getLogger());`
`62`	`62`	`if (maxThreads != null)`
`63`	`63`	`{`
`64`		`- args.add("-threads");`
	`64`	`+ args.add("--threads");`
`65`	`65`	`args.add(String.valueOf(maxThreads));`
`66`	`66`	`}`
`67`	`67`