Update buttons

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisModule.java

@@ -44,6 +44,7 @@
 import org.labkey.sequenceanalysis.button.CellHashingButton;
 import org.labkey.sequenceanalysis.button.ChangeReadsetStatusButton;
 import org.labkey.sequenceanalysis.button.ChangeReadsetStatusForAnalysesButton;
+import org.labkey.sequenceanalysis.button.CiteSeqButton;
 import org.labkey.sequenceanalysis.button.ReprocessLibraryButton;
 import org.labkey.sequenceanalysis.button.RunMultiQCButton;
 import org.labkey.sequenceanalysis.pipeline.AlignmentAnalysisJob;
@@ -365,6 +366,7 @@ public void doStartupAfterSpringConfig(ModuleContext moduleContext)
         LDKService.get().registerQueryButton(new AddSraRunButton(), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READSETS);
         LDKService.get().registerQueryButton(new RunMultiQCButton(), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READSETS);
         LDKService.get().registerQueryButton(new CellHashingButton(), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READSETS);
+        LDKService.get().registerQueryButton(new CiteSeqButton(), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READSETS);
 
         LDKService.get().registerQueryButton(new ChangeReadsetStatusForAnalysesButton(), "sequenceanalysis", "sequence_analyses");
         LDKService.get().registerQueryButton(new ChangeReadsetStatusButton(), "sequenceanalysis", "sequence_readsets");

SequenceAnalysis/src/org/labkey/sequenceanalysis/button/CellHashingButton.java

@@ -17,7 +17,7 @@ public class CellHashingButton extends SimpleButtonConfigFactory
 {
     public CellHashingButton()
     {
-        super(ModuleLoader.getInstance().getModule(SequenceAnalysisModule.class), "Generate CITE-seq-Counts", "SequenceAnalysis.window.OutputHandlerWindow.readsetButtonHandler(dataRegionName, '" + CellHashingHandler.class.getName() + "');", new LinkedHashSet<>(Arrays.asList(ClientDependency.fromModuleName("ldk"), ClientDependency.fromModuleName("laboratory"), ClientDependency.fromPath("sequenceanalysis/window/OutputHandlerWindow.js"))));
+        super(ModuleLoader.getInstance().getModule(SequenceAnalysisModule.class), "Generate Cell Hashing Calls", "SequenceAnalysis.window.OutputHandlerWindow.readsetButtonHandler(dataRegionName, '" + CellHashingHandler.class.getName() + "');", new LinkedHashSet<>(Arrays.asList(ClientDependency.fromModuleName("ldk"), ClientDependency.fromModuleName("laboratory"), ClientDependency.fromPath("sequenceanalysis/window/OutputHandlerWindow.js"))));
         setPermission(UpdatePermission.class);
     }
 }

SequenceAnalysis/src/org/labkey/sequenceanalysis/button/CiteSeqButton.java

@@ -0,0 +1,24 @@
+package org.labkey.sequenceanalysis.button;
+
+import org.labkey.api.ldk.table.SimpleButtonConfigFactory;
+import org.labkey.api.module.ModuleLoader;
+import org.labkey.api.security.permissions.UpdatePermission;
+import org.labkey.api.view.template.ClientDependency;
+import org.labkey.sequenceanalysis.SequenceAnalysisModule;
+import org.labkey.sequenceanalysis.analysis.CellHashingHandler;
+import org.labkey.sequenceanalysis.analysis.CiteSeqHandler;
+
+import java.util.Arrays;
+import java.util.LinkedHashSet;
+
+/**
+ * Created by bimber on 7/12/2017.
+ */
+public class CiteSeqButton extends SimpleButtonConfigFactory
+{
+    public CiteSeqButton()
+    {
+        super(ModuleLoader.getInstance().getModule(SequenceAnalysisModule.class), "Generate CITE-seq Table", "SequenceAnalysis.window.OutputHandlerWindow.readsetButtonHandler(dataRegionName, '" + CiteSeqHandler.class.getName() + "');", new LinkedHashSet<>(Arrays.asList(ClientDependency.fromModuleName("ldk"), ClientDependency.fromModuleName("laboratory"), ClientDependency.fromPath("sequenceanalysis/window/OutputHandlerWindow.js"))));
+        setPermission(UpdatePermission.class);
+    }
+}