Expand duplicated prototype query

Author: bbimber

singlecell/resources/queries/singlecell/duplicatePrototypes.query.xml

@@ -2,7 +2,7 @@
     <metadata>
         <tables xmlns="http://labkey.org/data/xml">
             <table tableName="" useColumnOrder="false" tableDbType="TABLE">
-                <tableTitle>Duplicated Seurat Object Prototypes</tableTitle>
+                <tableTitle>Duplicated Seurat Object Prototypes and Loupe Files</tableTitle>
                 <columns>
                     <column columnName="readset">
                         <columnTitle>Readset Id</columnTitle>

singlecell/resources/queries/singlecell/duplicatePrototypes.sql

@@ -2,9 +2,24 @@ SELECT
     o.readset,
     min(o.rowId) as minRowId,
     min(o.analysis_id) as minAnalysisId,
-    count(*) as totalPrototypes
+    count(*) as totalPrototypes,
+    o.category
 
 FROM sequenceanalysis.outputfiles o
 WHERE o.category = 'Seurat Object Prototype'
 GROUP BY o.readset
+HAVING COUNT(*) > 1
+
+UNION ALL
+
+SELECT
+    o.readset,
+    min(o.rowId) as minRowId,
+    min(o.analysis_id) as minAnalysisId,
+    count(*) as totalPrototypes,
+    o.category
+
+FROM sequenceanalysis.outputfiles o
+WHERE o.category = '10x Loupe File'
+GROUP BY o.readset
 HAVING COUNT(*) > 1

singlecell/resources/views/singleCellDataManagement.html

@@ -130,7 +130,7 @@
                             queryName: 'stalePrototypes'
                         })
                     }, {
-                        name: 'Duplicate Seurat Object Prototypes',
+                        name: 'Duplicate Seurat Object Prototypes and Loupe Files',
                         url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {
                             schemaName: 'singlecell',
                             queryName: 'duplicatePrototypes'