Bugfix to automatic resource setting for JBrowseLucenePipelineJob

Author: bbimber

jbrowse/src/org/labkey/jbrowse/pipeline/JBrowseLucenePipelineJob.java

@@ -162,8 +162,11 @@ public static void prepareLuceneIndex(File vcf, File indexDir, Logger log, List<
         args.add("-O");
         args.add(indexDir.getPath());
 
-        args.add("--validation-stringency");
-        args.add("LENIENT");
+        if (allowLenientLuceneProcessing)
+        {
+            args.add("--validation-stringency");
+            args.add("LENIENT");
+        }
 
         for (String field : infoFieldsForFullTextSearch)
         {