Bugfix to ProcessVariantsHandler resume

bbimber · bbimber · commit 63474a31a74d · 2024-04-02T21:28:02.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/ProcessVariantsHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/pipeline/ProcessVariantsHandler.java
@@ -435,7 +435,7 @@ public static File processVCF(File input, Integer libraryId, JobContext ctx, Res
 
             try
             {
-                SequenceAnalysisService.get().ensureVcfIndex(input, ctx.getLogger());
+                SequenceAnalysisService.get().ensureVcfIndex(currentVCF, ctx.getLogger());
             }
             catch (IOException e)
             {

Original file line number	Diff line number	Diff line change
`@@ -435,7 +435,7 @@ public static File processVCF(File input, Integer libraryId, JobContext ctx, Res`
`435`	`435`
`436`	`436`	`try`
`437`	`437`	`{`
`438`		`- SequenceAnalysisService.get().ensureVcfIndex(input, ctx.getLogger());`
	`438`	`+ SequenceAnalysisService.get().ensureVcfIndex(currentVCF, ctx.getLogger());`
`439`	`439`	`}`
`440`	`440`	`catch (IOException e)`
`441`	`441`	`{`