Set paragraph temp dir

Author: bbimber

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/ParagraphStep.java

@@ -228,6 +228,7 @@ else if (!svVcf.exists())
                 ctx.getFileManager().addIntermediateFile(coverageFile);
 
                 DockerWrapper dockerWrapper = new DockerWrapper("ghcr.io/bimberlabinternal/paragraph:latest", ctx.getLogger(), ctx);
+                dockerWrapper.setTmpDir(new File(SequencePipelineService.get().getJavaTempDir()));
                 List<String> paragraphArgs = new ArrayList<>();
                 paragraphArgs.add("/opt/paragraph/bin/multigrmpy.py");