Allow editing of saved templates

Author: bbimber

SequenceAnalysis/resources/schemas/sequenceanalysis.xml

@@ -2378,7 +2378,7 @@
             <column columnName="name"/>
             <column columnName="description"/>
             <column columnName="taskid">
-                <isHidden>true</isHidden>
+                <!--<isHidden>true</isHidden>-->
             </column>
             <column columnName="originalAnalysisId">
                 <columnTitle>Original Analysis</columnTitle>
@@ -2387,10 +2387,11 @@
                     <fkTable>sequence_analyses</fkTable>
                     <fkColumnName>rowid</fkColumnName>
                 </fk>
+                <isHidden>true</isHidden>
             </column>
             <column columnName="json">
                 <columnTitle>Config</columnTitle>
-                <isHidden>true</isHidden>
+                <!--<isHidden>true</isHidden>-->
             </column>
             <column columnName="container">
                 <isHidden>true</isHidden>

SequenceAnalysis/resources/web/SequenceAnalysis/panel/BaseSequencePanel.js

@@ -334,7 +334,8 @@ Ext4.define('SequenceAnalysis.panel.BaseSequencePanel', {
                 xtype: 'ldk-linkbutton',
                 text: 'Manage Saved Templates',
                 linkCls: 'labkey-text-link',
-                linkTarget: LABKEY.ActionURL.buildURL('query', 'executeQuery', Laboratory.Utils.getQueryContainerPath(), {schemaName: 'sequenceanalysis', 'query.queryName': 'saved_analyses', 'query.jobType~eq': this.jobType}),
+                href: LABKEY.ActionURL.buildURL('query', 'executeQuery', Laboratory.Utils.getQueryContainerPath(), {schemaName: 'sequenceanalysis', 'query.queryName': 'saved_analyses', 'query.taskid~eq': this.jobType}),
+                linkTarget: '_blank',
                 visible: LABKEY.Security.currentUser.isAdmin,
                 scope: this
             }]

SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisController.java

@@ -384,7 +384,7 @@ public BasePipelineStepAction(String htmlFile)
         public ModelAndView getView(Object form, BindException errors)
         {
             LinkedHashSet<ClientDependency> cds = new LinkedHashSet<>();
-            for (PipelineStepProvider fact : SequencePipelineService.get().getAllProviders())
+            for (PipelineStepProvider<?> fact : SequencePipelineService.get().getAllProviders())
             {
                 cds.addAll(fact.getClientDependencies());
             }

SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisModule.java

@@ -390,7 +390,9 @@ public void doStartupAfterSpringConfig(ModuleContext moduleContext)
         LDKService.get().registerQueryButton(new ShowEditUIButton(this, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_REF_LIBRARIES, UpdatePermission.class), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_REF_LIBRARIES);
         LDKService.get().registerQueryButton(new ShowEditUIButton(this, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_REF_NT_SEQUENCES, UpdatePermission.class), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_REF_NT_SEQUENCES);
         LDKService.get().registerQueryButton(new ShowEditUIButton(this, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READ_DATA, UpdatePermission.class), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READ_DATA);
+        LDKService.get().registerQueryButton(new ShowEditUIButton(this, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_SAVED_ANALYSES, UpdatePermission.class), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_SAVED_ANALYSES);
         LDKService.get().registerQueryButton(new ShowBulkEditButton(this, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_REF_NT_SEQUENCES), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_REF_NT_SEQUENCES);
+
         LDKService.get().registerQueryButton(new ShowBulkEditButton(this, SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READ_DATA), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READ_DATA);
 
         LDKService.get().registerQueryButton(new AddSraRunButton(), SequenceAnalysisSchema.SCHEMA_NAME, SequenceAnalysisSchema.TABLE_READSETS);