Log STAR version

bbimber · bbimber · commit 4f26eb449cb6 · 2020-05-01T13:38:14.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/StarWrapper.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/alignment/StarWrapper.java
@@ -489,7 +489,7 @@ public void logVersionString() throws PipelineJobException
         args.add(getExe(false).getPath());
         args.add("--version");
 
-        execute(args);
-
+        String version = executeWithOutput(args);
+        getLogger().info("STAR version: " + version);
     }
 }

Original file line number	Diff line number	Diff line change
`@@ -489,7 +489,7 @@ public void logVersionString() throws PipelineJobException`
`489`	`489`	`args.add(getExe(false).getPath());`
`490`	`490`	`args.add("--version");`
`491`	`491`
`492`		`- execute(args);`
`493`		`-`
	`492`	`+ String version = executeWithOutput(args);`
	`493`	`+ getLogger().info("STAR version: " + version);`
`494`	`494`	`}`
`495`	`495`	`}`