Reduce rsync verbosity

Author: bbimber

SequenceAnalysis/api-src/org/labkey/api/sequenceanalysis/pipeline/ReferenceGenomeManager.java

@@ -92,7 +92,7 @@ public void cacheGenomeLocally(ReferenceGenome genome, Logger log) throws Pipeli
 
         //Note: neither source nor dest have trailing slashes, so the entire source (i.e '128', gets synced into a subdir of dest)
         new SimpleScriptWrapper(log).execute(Arrays.asList(
-                "rsync", "-r", "-vi", "-a", "--delete", "--delete-excluded", "--no-owner", "--no-group", sourceDir.getPath(), localCacheDir.getPath()
+                "rsync", "-r", "-a", "--delete", "--delete-excluded", "--no-owner", "--no-group", sourceDir.getPath(), localCacheDir.getPath()
         ));
 
         try

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/util/AbstractGenomicsDBImportHandler.java

@@ -539,7 +539,7 @@ public void processFilesRemote(List<SequenceOutputFile> inputFiles, JobContext c
                             ctx.getLogger().debug("Copying directory with rsync: " + sourceFolder.getPath());
                             //NOTE: since neither path will end in slashes, rsync to the parent folder should result in the correct placement
                             new SimpleScriptWrapper(ctx.getLogger()).execute(Arrays.asList(
-                                    "rsync", "-r", "-vi", "-a", "--delete", "--delete-excluded", "--no-owner", "--no-group", sourceFolder.getPath(), destContigFolder.getParentFile().getPath()
+                                    "rsync", "-r", "-a", "--delete", "--delete-excluded", "--no-owner", "--no-group", sourceFolder.getPath(), destContigFolder.getParentFile().getPath()
                             ));
                         }
 

SequenceAnalysis/src/org/labkey/sequenceanalysis/run/util/GenotypeGVCFsWrapper.java

@@ -198,7 +198,7 @@ else if (f.isDirectory() && doneFile.exists())
                                 //NOTE: since neither path will end in slashes, rsync to the parent folder should result in the correct placement
                                 ctx.getLogger().debug("Copying directory with rsync: " + movedFile.getPath());
                                 new SimpleScriptWrapper(ctx.getLogger()).execute(Arrays.asList(
-                                    "rsync", "-r", "-vi", "-a", "--delete", "--delete-excluded", "--no-owner", "--no-group", f.getPath(), movedFile.getParentFile().getPath()
+                                    "rsync", "-r", "-a", "--delete", "--delete-excluded", "--no-owner", "--no-group", f.getPath(), movedFile.getParentFile().getPath()
                                 ));
                             }