Bugfix filepath in AppendSaturation

bbimber · bbimber · commit 3f2795b4629a · 2021-10-28T15:32:25.000-07:00
diff --git a/singlecell/src/org/labkey/singlecell/pipeline/singlecell/AppendSaturation.java b/singlecell/src/org/labkey/singlecell/pipeline/singlecell/AppendSaturation.java
@@ -67,7 +67,7 @@ public void init(SequenceOutputHandler.JobContext ctx, List<SequenceOutputFile>
             {
                 if (!LOUPE_TYPE.isType(so.getFile()))
                 {
-                    File meta = new File(so.getFile().getPath().replaceAll(".rds", ".cellBarcodes.csv"));
+                    File meta = new File(so.getFile().getPath().replaceAll(".seurat.rds", ".cellBarcodes.csv"));
                     if (!meta.exists())
                     {
                         throw new PipelineJobException("Cannot find expected metadata file: " + meta.getPath());

Original file line number	Diff line number	Diff line change
`@@ -67,7 +67,7 @@ public void init(SequenceOutputHandler.JobContext ctx, List<SequenceOutputFile>`
`67`	`67`	`{`
`68`	`68`	`if (!LOUPE_TYPE.isType(so.getFile()))`
`69`	`69`	`{`
`70`		`- File meta = new File(so.getFile().getPath().replaceAll(".rds", ".cellBarcodes.csv"));`
	`70`	`+ File meta = new File(so.getFile().getPath().replaceAll(".seurat.rds", ".cellBarcodes.csv"));`
`71`	`71`	`if (!meta.exists())`
`72`	`72`	`{`
`73`	`73`	`throw new PipelineJobException("Cannot find expected metadata file: " + meta.getPath());`