|
23 | 23 | header: 'Data and Processing', |
24 | 24 | items: [{ |
25 | 25 | name: '10x GEX Libraries Needing Alignment', |
26 | | - url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', 'query.totalAlignments~eq': 0, 'query.totalForwardReads~isnonblank': null, 'query.application~contains': 'single', 'query.status~isblank': null, 'query.isArchived~eq': 0, 'query.librarytype~contains': 'GEX', 'query.librarytype~doesnotcontain': 'Multiome', 'query.sort': 'name'}) |
| 26 | + url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', 'query.totalAlignments~eq': 0, 'query.totalForwardReads~isnonblank': null, 'query.application~contains': 'single', 'query.status~isblank': null, 'query.isArchived~eq': 0, 'query.librarytype~contains': 'GEX', 'query.librarytype~doesnotcontain': 'Multiome', 'query.sort': 'name', 'query.maxRows': 250}) |
27 | 27 | },{ |
28 | 28 | name: '10x VDJ Libraries Needing Alignment', |
29 | | - url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', 'query.totalAlignments~eq': 0, 'query.totalForwardReads~isnonblank': null, 'query.application~contains': 'single', 'query.status~isblank': null, 'query.isArchived~eq': 0, 'query.librarytype~doesnotcontain': 'BCR', 'query.librarytype~contains': 'VDJ', 'query.sort': 'name'}) |
| 29 | + url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', 'query.totalAlignments~eq': 0, 'query.totalForwardReads~isnonblank': null, 'query.application~contains': 'single', 'query.status~isblank': null, 'query.isArchived~eq': 0, 'query.librarytype~doesnotcontain': 'BCR', 'query.librarytype~contains': 'VDJ', 'query.sort': 'name', 'query.maxRows': 250}) |
30 | 30 | },{ |
31 | 31 | name: 'Hashing Libraries Needing Feature Counts', |
32 | | - url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', 'query.application~eq': 'Cell Hashing', 'query.totalForwardReads~isnonblank': null, 'query.outputFileTypes~doesnotcontain': 'Cell Hashing Counts', 'query.status~isblank': null, 'query.sort': 'name'}) |
| 32 | + url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', 'query.application~eq': 'Cell Hashing', 'query.totalForwardReads~isnonblank': null, 'query.outputFileTypes~doesnotcontain': 'Cell Hashing Counts', 'query.status~isblank': null, 'query.sort': 'name', 'query.maxRows': 250}) |
33 | 33 | },{ |
34 | 34 | name: 'Cite-seq Libraries Needing Feature Counts', |
35 | | - url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', 'query.application~eq': 'CITE-Seq', 'query.totalForwardReads~isnonblank': null, 'query.outputFileTypes~doesnotcontain': 'CITE-seq Counts', 'query.status~isblank': null, 'query.sort': 'name'}) |
| 35 | + url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', 'query.application~contains': 'CITE-Seq', 'query.totalForwardReads~isnonblank': null, 'query.outputFileTypes~doesnotcontain': 'CITE-seq Counts', 'query.status~isblank': null, 'query.sort': 'name', 'query.maxRows': 250}) |
36 | 36 | },{ |
37 | 37 | name: 'VLoupe Files Needing TCR Import', |
38 | 38 | url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'outputfiles', 'query.readset/status~isblank': null, 'query.readset/numTcrResults~eq': 0, 'query.category~eq': '10x VLoupe', 'query.sort': 'readset/name'}) |
39 | 39 | },{ |
40 | 40 | name: 'Loupe Files Missing Prototype', |
41 | | - url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'outputfiles', 'query.category~eq': '10x Loupe File', 'query.readset/status~isblank': null, 'query.readset/cDNA/rowid~isnonblank': null, 'query.readset/outputFileTypes~doesnotcontain': 'Prototype', 'query.sort': 'readset/name'}) |
| 41 | + url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'outputfiles', 'query.category~eq': '10x Loupe File', 'query.readset/status~isblank': null, 'query.readset/cDNA/rowid~isnonblank': null, 'query.readset/outputFileTypes~doesnotcontain': 'Prototype', 'query.sort': 'readset/name', 'query.maxRows': 250}) |
42 | 42 | },{ |
43 | 43 | name: 'Readsets Assigned to Run Lacking Data', |
44 | 44 | url: LABKEY.ActionURL.buildURL('query', 'executeQuery.view', null, {schemaName: 'sequenceanalysis', queryName: 'sequence_readsets', 'query.viewName': 'Assigned to Run Lacking Data'}) |
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