Allow for space in HTML

bbimber · bbimber · commit 39737a093fed · 2025-12-17T19:17:54.000-08:00
diff --git a/singlecell/src/org/labkey/singlecell/run/CellRangerGexCountStep.java b/singlecell/src/org/labkey/singlecell/run/CellRangerGexCountStep.java
@@ -693,7 +693,7 @@ public static Chemistry inferChemistry(File cloupeFile) throws PipelineJobExcept
             throw new IllegalArgumentException("Missing file: " + html.getPath());
         }
 
-        final Pattern pattern = Pattern.compile("\\[\"Chemistry\",\"(.*?)\"],");
+        final Pattern pattern = Pattern.compile("\\[\"Chemistry\",[ ]{0,1}\"(.*?)\"],");
         try (BufferedReader reader = Readers.getReader(html))
         {
             String line;

Original file line number	Diff line number	Diff line change
`@@ -693,7 +693,7 @@ public static Chemistry inferChemistry(File cloupeFile) throws PipelineJobExcept`
`693`	`693`	`throw new IllegalArgumentException("Missing file: " + html.getPath());`
`694`	`694`	`}`
`695`	`695`
`696`		`- final Pattern pattern = Pattern.compile("\\[\"Chemistry\",\"(.*?)\"],");`
	`696`	`+ final Pattern pattern = Pattern.compile("\\[\"Chemistry\",[ ]{0,1}\"(.*?)\"],");`
`697`	`697`	`try (BufferedReader reader = Readers.getReader(html))`
`698`	`698`	`{`
`699`	`699`	`String line;`