Bugfix to demuxEM with TCR data

bbimber · bbimber · commit 35c7d35f885d · 2023-01-06T09:32:44.000-08:00
diff --git a/singlecell/src/org/labkey/singlecell/CellHashingServiceImpl.java b/singlecell/src/org/labkey/singlecell/CellHashingServiceImpl.java
@@ -483,7 +483,9 @@ else if (genomeIds.size() > 1)
                 }
 
                 // NOTE: cache this using the source file's genome ID (which might be the TCR library), rather than the GEX genome
-                gexReadsetToH5Map.put(readsetId + "-" + cachedGenomes.iterator().next(), dataId);
+                String key = readsetId + "-" + cachedGenomes.iterator().next();
+                job.getLogger().debug("Caching h5 file: " + key + ":" + dataId);
+                gexReadsetToH5Map.put(key, dataId);
             }
             else
             {

Original file line number	Diff line number	Diff line change
`@@ -483,7 +483,9 @@ else if (genomeIds.size() > 1)`
`483`	`483`	`}`
`484`	`484`
`485`	`485`	`// NOTE: cache this using the source file's genome ID (which might be the TCR library), rather than the GEX genome`
`486`		`- gexReadsetToH5Map.put(readsetId + "-" + cachedGenomes.iterator().next(), dataId);`
	`486`	`+ String key = readsetId + "-" + cachedGenomes.iterator().next();`
	`487`	`+ job.getLogger().debug("Caching h5 file: " + key + ":" + dataId);`
	`488`	`+ gexReadsetToH5Map.put(key, dataId);`
`487`	`489`	`}`
`488`	`490`	`else`
`489`	`491`	`{`