Change error to warning

bbimber · bbimber · commit 3037dd669fac · 2020-09-14T09:17:50.000-07:00
diff --git a/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/MergeLoFreqVcfHandler.java b/SequenceAnalysis/src/org/labkey/sequenceanalysis/run/analysis/MergeLoFreqVcfHandler.java
@@ -393,7 +393,7 @@ else if ("I".equals(line[0]))
 
                 if (!analysesWithoutPindel.isEmpty())
                 {
-                    ctx.getLogger().error("Analysis missing pindel: " + StringUtils.join(analysesWithoutPindel, ";"));
+                    ctx.getLogger().warn("Analysis missing pindel: " + StringUtils.join(analysesWithoutPindel, ";"));
                 }
             }
             catch (IOException e)

Original file line number	Diff line number	Diff line change
`@@ -393,7 +393,7 @@ else if ("I".equals(line[0]))`
`393`	`393`
`394`	`394`	`if (!analysesWithoutPindel.isEmpty())`
`395`	`395`	`{`
`396`		`- ctx.getLogger().error("Analysis missing pindel: " + StringUtils.join(analysesWithoutPindel, ";"));`
	`396`	`+ ctx.getLogger().warn("Analysis missing pindel: " + StringUtils.join(analysesWithoutPindel, ";"));`
`397`	`397`	`}`
`398`	`398`	`}`
`399`	`399`	`catch (IOException e)`